Epigenetic Control of Plant Development

Principal Investigator:
- Myriam Calonje (Email)
Description:
Compared to animals, plants show a remarkable plasticity that allows them to survive under different environmental conditions, compensating for their lack of mobility. To achieve this, plants need to be able to change pre-established cell fates. The epigenetic mechanisms that control chromatin organization are known to regulate cell differentiation both in animals and plants. Among these mechanisms, the Polycomb Group (PcG) machinery plays a crucial role in maintaining the stable repression of genes that are not required in a specific cell fate, thus, establishing a memory of differentiation. However, the high degree of cellular plasticity in plants suggests a more flexible PcG regulation. Unfortunately, this important regulatory mechanism is still largely unknown in plants; furthermore, how PcG function is induced, modulated, or repressed according to plant requirements remains a mystery.
PcG proteins form multiprotein complexes with different histone modifying activities. In animals, the two best-characterized PcG complexes are the PcG repressive complex 2 (PRC2) and PRC1 that possess histone 3 lysine 27 (H3K27) trimethyltransferase and histone 2A lysine 119 (H2AK119) E3 ubiquitin ligase activity, respectively. There is clear evidence that PRC2-mediated H3K27 trimethylation (H3K27me3) is indispensable for gene repression in plants; however, the implication of a plant PRC1 with H2A monoubiquitin ligase activity has just been recently revealed in our laboratory. Interestingly, several data suggest that the repression of genes involved in different cellular and developmental programs has different requirements for PRC1 subunit composition and H2Aub marking. An intriguing possibility could be that the composition of PRC1 determines the specificity and flexibility of repression, which could explain why plants are able to maintain a memory of differentiation and a high degree of plasticity, simultaneously. Our main goal is to unveil the different PcG regulatory mechanisms in plants and their biological functions.
Publications:
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Zhou, Y., Romero-Campero, F.J., Gómez-Zambrano, Á., Turck, F., Calonje, M. (2017) H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity. Genome Biol 18, 69.
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Merini, W., Romero-Campero, F.J., Gómez-Zambrano, A., Zhou, Y., Turck, F., Calonje, M. (2017) The Arabidosis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B and C Impact Gene Networks Throughout All Stages of Plant Development. Plant Physiol 173(1), 627 - 641.
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Picó, S., Ortiz-Marchena, M.I., Merini, W., Calonje M. (2015) Deciphering the Role of POLYCOMB REPRESSIVE COMPLEX1 Variants in Regulating the Acquisition of Flowering Competence in Arabidopsis. Plant Physiol 168(4), 1286-1297.
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Merini, W., Calonje, M. (2015) PRC1 is taking the lead in PcG repression. Plant J 83(1), 110 - 120.
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Calonje, M. (2014) PRC1 marks the difference in plant PcG repression. Mol Plant 7(3) 459 - 471.
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Yang, C., Bratzel, F., Hohmann, N., Koch, M., Turck, F., Calonje, M. (2013) VAL- and AtBMI1-mediated H2Aub initiate the switch from embryonic to postgerminative growth in Arabidopsis. Curr Biol 23(14) 1324 - 1329.
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Bratzel, F., Yang, C., Angelova, A., López-Torrejón, G., Koch, M., del Pozo, J.C., Calonje, M. (2012) Regulation of the new Arabidopsis imprinted gene AtBMI1C requires the interplay of different epigenetic mechanisms. Mol Plant 5(1) 260 - 269.
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Bratzel, F., López-Torrejón, G., Koch, M., Del Pozo, J.C., Calonje, M. (2010) Keeping cell identity in Arabidopsis requires PRC1 RING-finger homologs that catalyze H2A monoubiquitination. Curr Biol 20(20), 1853 - 1859.
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Sánchez, R., Kim, M.Y., Calonje, M., Moon, Y.H., Sung, Z.R. (2009) Temporal and spatial requirement of EMF1 activity for Arabidopsis vegetative and reproductive development. Mol Plant 2(4), 643 - 653.
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Calonje, M., Martín-Bravo, S., Dobeš, C., Gong, W., Jordon-Thaden, I., Kiefer, C., Kiefer, M., Paule, J., Schmickl, R., Koch, M.A. (2009) Non-coding nuclear DNA markers in phylogenetic reconstruction. Plant Systematics and Evolution 282 (3), 257 - 280.
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Sanchez-Pulido L1, Devos D, Sung ZR, Calonje M. (2008) RAWUL: a new ubiquitin-like domain in PRC1 ring finger proteins that unveils putative plant and worm PRC1 orthologs. BMC Genomics 27, 308.
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Calonje, M., Sanchez, R., Chen, L., Sung, Z.R. (2008) EMBRYONIC FLOWER1 participates in polycomb group-mediated AG gene silencing in Arabidopsis. Plant Cell 20(2), 277-91.
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Carmona, M.J., Cubas, P., Calonje, M., Martínez-Zapater, J.M. (2007) Flowering transition in grapevine (Vitis vinifera L.). Canadian Journal of Botany 85(8): 701-711.
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Carmona, M.J., Calonje, M., Martínez-Zapater, J.M. (2007) The FT/TFL1 gene family in grapevine. Plant Mol Biol 63(5), 637 - 650.
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Calonje, M., Sung, Z.R. (2006) Complexity beneath the silence. Curr Opin Plant Biol 9(5), 530 - 537.
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Calonje, M., Cubas, P., Martínez-Zapater, J.M., Carmona, M.J. (2004) Floral meristem identity genes are expressed during tendril development in grapevine. Plant Physiol 135(3), 1491-501.
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Calonje, M., Garcia-Mendoza, C., Perez-Cabo, A., Bernardo, D., Novaes-Ledieu, M. (2000) Interaction between the mycoparasite Verticillium fungicola and the vegetative mycelial phase of Agaricus bisporus. Mycological Research 104(8), 988 - 992.
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Bernardo, D., Mendoza, C.G., Calonje, M., Novaes-Ledieu, M. (1999) Chemical analysis of the lamella walls of Agaricus bisporus fruit bodies. Curr Microbiol 38(6), 364 - 367.
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Galán, B., García-Mendoza, C., Calonje, M., Novaes-Ledieu, M. (1999) News & notes: production, purification, and properties of an endo-1, 3-beta-glucanase from the basidiomycete Agaricus bisporus. Curr Microbiol 38(3), 190 - 193.
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Garcia-Mendoza, C., Perez-Cabo, A., Calonje, M., Galan, B., Novaes-Ledieu, M. (1996) Chemical and Structural Differences in Cell Wall Polysaccharides of Two Monokaryotic Strains and Their Resulting Dikaryon of Agaricus bisporus. Curr Microbiol 33(4), 211 - 215.
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Calonje, M., García-Mendoza, C., Pérez-Cabo, A., Novaes-Ledieu, M. (1995) Some significant differences in wall chemistry among four commercial Agaricus bisporus strains. Curr Microbiol 38(3), 190 - 193.
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