ChlamyNET is a web-based tool developed using WiGis, a platform for the visualization of large-scale, highly interactive graphs in a user’s web browser. The aim of ChlamyNET is to facilitate the studies over the Chlamydomonas transcriptome. Please, take a look at the tutorial or watch this video tutorial. A user can search for a set of genes of interest using the Search panel. The analysis of individual genes or sets of genes including their neighbouring genes can be performed using the Analysis sections in the Search and Selected Locus Details. Please, take a look at the case studies for some examples on how to use ChlamyNET.